I don't see anything obvious on the main switch or route server, Owen's theory seems like a good hypothesis and might be a good place to start.
Mainswitch-ge-0/0/11
MAC statistics: Receive Transmit
Total octets 47973148598 48576691195
Total packets 355364271 338323850
Unicast packets 355185413 282081737
Broadcast packets 102492 1488675
Multicast packets 76366 54753438
CRC/Align errors 0 0
FIFO errors 0 0
MAC control frames 0 0
MAC pause frames 0 0
Oversized frames 0
Jabber frames 0
Fragment frames 0
Code violations 0
Autonegotiation information:
Negotiation status: Complete
Link partner:
Link mode: Full-duplex, Flow control: Symmetric/Asymmetric,
Remote fault: OK, Link partner Speed: 1000 Mbps
Local resolution:
Flow control: Symmetric, Remote fault: Link OK
Mainswitch-ge-0/0/1
MAC statistics: Receive Transmit
Total octets 180901973 5461408588
Total packets 1389854 57880557
Unicast packets 1353384 1457681
Broadcast packets 0 1591637
Multicast packets 36470 54831239
CRC/Align errors 0 0
FIFO errors 0 0
MAC control frames 0 0
MAC pause frames 0 0
Oversized frames 0
Jabber frames 0
Fragment frames 0
Code violations 0
Autonegotiation information:
Negotiation status: Complete
Link partner:
Link mode: Full-duplex, Flow control: Symmetric/Asymmetric,
Remote fault: OK, Link partner Speed: 1000 Mbps
Local resolution:
Flow control: Symmetric, Remote fault: Link OK
RouterServer1-bce1
...
media: Ethernet autoselect (1000baseT <full-duplex,flowcontrol,rxpause,txpause>)
status: active
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